Funding & Acknowledgements

The data used in this analysis is from the Export Standardized Tables in the SEACAR Data Discovery Interface (DDI). Documents and information available through the SEACAR DDI are owned by the data provider(s) and users are expected to provide appropriate credit following accepted citation formats. Users are encouraged to access data to maximize utilization of gained knowledge, reducing redundant research and facilitating partnerships and scientific innovation.

With respect to documents and information available from SEACAR DDI, neither the State of Florida nor the Florida Department of Environmental Protection makes any warranty, expressed or implied, including the warranties of merchantability and fitness for a particular purpose arising out of the use or inability to use the data, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights.

This report was funded in part, through a grant agreement from the Florida Department of Environmental Protection, Florida Coastal Management Program, by a grant provided by the Office for Coastal Management under the Coastal Zone Management Act of 1972, as amended, National Oceanic and Atmospheric Administration. The views, statements, findings, conclusions and recommendations expressed herein are those of the author(s) and do not necessarily reflect the views of the State of Florida, NOAA or any of their sub agencies.

Published: 2025-10-08

Threshold Filtering

Threshold filters, following the guidance of Florida Department of Environmental Protection’s (FDEP) Division of Environmental Assessment and Restoration (DEAR) are used to exclude specific results values from the SEACAR Analysis. Based on the threshold filters, Quality Assurance / Quality Control (QAQC) Flags are inserted into the SEACAR_QAQCFlagCode and SEACAR_QAQC_Description columns of the export data. The Include column indicates whether the QAQC Flag will also indicate that data are excluded from analysis. No data are excluded from the data export, but the analysis scripts can use the Include column to exclude data (1 to include, 0 to exclude).

Continuous Water Quality threshold values
Parameter Name Units Low Threshold High Threshold
Dissolved Oxygen mg/L -0.000001 50
Dissolved Oxygen Saturation % -0.000001 500
Salinity ppt -0.000001 70
Turbidity NTU -0.000001 4000
Water Temperature Degrees C -5.000000 45
pH None 2.000000 14
Discrete Water Quality threshold values
Parameter Name Units Low Threshold High Threshold
Ammonia, Un-ionized (NH3) mg/L - -
Ammonium, Filtered (NH4) mg/L - -
Chlorophyll a, Corrected for Pheophytin ug/L - -
Chlorophyll a, Uncorrected for Pheophytin ug/L - -
Colored Dissolved Organic Matter PCU - -
Dissolved Oxygen mg/L -0.000001 25
Dissolved Oxygen Saturation % -0.000001 310
Fluorescent Dissolved Organic Matter QSE - -
Light Extinction Coefficient m^-1 - -
NO2+3, Filtered mg/L - -
Nitrate (NO3) mg/L - -
Nitrite (NO2) mg/L - -
Nitrogen, organic mg/L - -
Phosphate, Filtered (PO4) mg/L - -
Salinity ppt -0.000001 70
Secchi Depth m 0.000001 50
Specific Conductivity mS/cm 0.005000 100
Total Kjeldahl Nitrogen mg/L - -
Total Nitrogen mg/L - -
Total Nitrogen mg/L - -
Total Phosphorus mg/L - -
Total Suspended Solids mg/L - -
Turbidity NTU - -
Water Temperature Degrees C 3.000000 40
pH None 2.000000 13
Quality Assurance Flags inserted based on threshold checks listed in Table 1 and 2
SEACAR QAQC Description Include SEACAR QAQCFlagCode
Exceeds maximum threshold 0 2Q
Below minimum threshold 0 4Q
Within threshold tolerance 1 6Q
No defined thresholds for this parameter 1 7Q

Value Qualifiers

Value qualifier codes included within the data are used to exclude certain results from the analysis. The data are retained in the data export files, but the analysis uses the Include column to filter the results.

STORET and WIN value qualifier codes

Value qualifier codes from STORET and WIN data are examined with the database and used to populate the Include column in data exports.

Value Qualifier codes excluded from analysis
Qualifier Source Value Qualifier Include MDL Description
STORET-WIN H 0 0 Value based on field kit determination; results may not be accurate
STORET-WIN J 0 0 Estimated value
STORET-WIN V 0 0 Analyte was detected at or above method detection limit
STORET-WIN Y 0 0 Lab analysis from an improperly preserved sample; data may be inaccurate

Discrete Water Quality Value Qualifiers

The following value qualifiers are highlighted in the Discrete Water Quality section of this report. An exception is made for Program 476 - Charlotte Harbor Estuaries Volunteer Water Quality Monitoring Network and data flagged with Value Qualifier H are included for this program only.

H - Value based on field kit determiniation; results may not be accurate. This code shall be used if a field screening test (e.g., field gas chromatograph data, immunoassay, or vendor-supplied field kit) was used to generate the value and the field kit or method has not been recognized by the Department as equivalent to laboratory methods.

I - The reported value is greater than or equal to the laboratory method detection limit but less than the laboratory practical quantitation limit.

Q - Sample held beyond the accepted holding time. This code shall be used if the value is derived from a sample that was prepared or analyzed after the approved holding time restrictions for sample preparation or analysis.

S - Secchi disk visible to bottom of waterbody. The value reported is the depth of the waterbody at the location of the Secchi disk measurement.

U - Indicates that the compound was analyzed for but not detected. This symbol shall be used to indicate that the specified component was not detected. The value associated with the qualifier shall be the laboratory method detection limit. Unless requested by the client, less than the method detection limit values shall not be reported

Systemwide Monitoring Program (SWMP) value qualifier codes

Value qualifier codes from the SWMP continuous program are examined with the database and used to populate the Include column in data exports. SWMP Qualifier Codes are indicated by QualifierSource=SWMP.

SWMP Value Qualifier codes
Qualifier Source Value Qualifier Include Description
SWMP -1 1 Optional parameter not collected
SWMP -2 0 Missing data
SWMP -3 0 Data rejected due to QA/QC
SWMP -4 0 Outside low sensor range
SWMP -5 0 Outside high sensor range
SWMP 0 1 Passed initial QA/QC checks
SWMP 1 0 Suspect data
SWMP 2 1 Reserved for future use
SWMP 3 1 Calculated data: non-vented depth/level sensorcorrection for changes in barometric pressure
SWMP 4 1 Historical: Pre-auto QA/QC
SWMP 5 1 Corrected data

Water Column

The water column habitat extends from the water’s surface to the bottom sediments, and it’s where fish, dolphins, crabs and people swim! So much life makes its home in the water column that the health of marine and coastal ecosystems, as well as human economies, depend on the condition of this vulnerable habitat. Local patterns of rainfall, temperature, winds and currents can rapidly change the condition of the water column, while global influences such as El Niño/La Niña, large-scale fluctuation in sea temperatures and climate change can have long-term effects. Inputs from the prosperity of our day-to-day lives including farming, mining and forestry, and emissions from power generation, automobiles and water treatment can also alter the health of the water column. Acting alone or together, each input can have complex and lasting effects on habitats and ecosystems.


SEACAR evaluates water column health with several essential parameters. These include nutrient surveys of nitrogen and phosphorus, and water quality assessments of salinity, dissolved oxygen, pH, and water temperature. Water clarity is evaluated with Secchi depth, turbidity, levels of chlorophyll a, total suspended solids, and colored dissolved organic matter. Additionally, the richness of nekton is indicated by the abundance of free-swimming fishes and macroinvertebrates like crabs and shrimps.

Seasonal Kendall-Tau Analysis

Indicators must have a minimum of five to ten years, depending on the habitat, of data within the geographic range of the analysis to be included in the analysis. Ten years of data are required for discrete parameters, and five years of data are required for continuous parameters. If there are insufficient years of data, the number of years of data available will be noted and labeled as “insufficient data to conduct analysis”. Further, for the preferred Seasonal Kendall-Tau test, there must be data from at least two months in common across at least two consecutive years within the RCP managed area being analyzed. Values that pass both of these tests will be included in the analysis and be labeled as Use_In_Analysis = TRUE. Any that fail either test will be excluded from the analyses and labeled as Use_In_Analysis = FALSE. The points for all Water Column plots displayed in this section are monthly averages. Trend significance will be denoted as “Significant Trend” (when p < 0.05), or “Non-significant Trend” (when p >= 0.05). Any parameters with insufficient data to perform Seasonal Kendall-Tau test will have their monthly averages plotted without a corresponding trend line.

Water Quality - Discrete

The following files were used in the discrete analysis:

  • Combined_WQ_WC_NUT_Chlorophyll_a_corrected_for_pheophytin-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Chlorophyll_a_uncorrected_for_pheophytin-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Colored_dissolved_organic_matter_CDOM-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Dissolved_Oxygen-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Dissolved_Oxygen_Saturation-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_pH-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Salinity-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Secchi_Depth-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Total_Nitrogen-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Total_Phosphorus-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Total_Suspended_Solids_TSS-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Turbidity-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Water_Temperature-2025-Sep-04.txt

Chlorophyll a, Corrected for Pheophytin - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average levels of chlorophyll a, corrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Scatter plot of monthly average levels of chlorophyll a, corrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Seasonal Kendall-Tau Trend Analysis for Chlorophyll a, Corrected for Pheophytin
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 347 21 2002 - 2025 1.4 0.0693 1.2232 0.0036 0.2976

Chlorophyll a, corrected for pheophytin, showed no detectable trend between 2002 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Chlorophyll a, Corrected for Pheophytin
ProgramID N_Data YearMin YearMax
5002 218 2002 2024
10000 132 2006 2025

Program names:

5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Chlorophyll a, Uncorrected for Pheophytin - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average levels of chlorophyll a, uncorrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Scatter plot of monthly average levels of chlorophyll a, uncorrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Seasonal Kendall-Tau Trend Analysis for Chlorophyll a, Uncorrected for Pheophytin
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 479 29 1997 - 2025 2 -0.1059 2.0729 -0.0133 0.1168

Chlorophyll a, uncorrected for pheophytin, showed no detectable trend between 1997 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Chlorophyll a, Uncorrected for Pheophytin
ProgramID N_Data YearMin YearMax
5002 293 1997 2024
10000 180 1997 2025
118 5 2005 2010
103 4 2005 2006

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
118 - National Aquatic Resource Surveys, National Coastal Condition Assessment4
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Colored Dissolved Organic Matter - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average colored dissolved organic matter (CDOM) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed CDOM (triangles) is included in the plot.
Scatter plot of monthly average colored dissolved organic matter (CDOM) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed CDOM (triangles) is included in the plot.
Seasonal Kendall-Tau Trend Analysis for Colored Dissolved Organic Matter
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 386 10 2016 - 2025 7.5 0.1434 7.9962 0.2576 0.1828

Colored dissolved organic matter showed no detectable trend between 2016 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Colored Dissolved Organic Matter
ProgramID N_Data YearMin YearMax
5002 355 2016 2025
10000 35 2017 2025

Program names:

5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Dissolved Oxygen - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average dissolved oxygen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen values measured in the field (circles) are included in the plot.
Scatter plot of monthly average dissolved oxygen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen values measured in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Dissolved Oxygen
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly increasing trend 10900 36 1972 - 2025 6.405 0.2132 5.7746 0.0187 0

Monthly average dissolved oxygen increased by 0.02 mg/L per year.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Dissolved Oxygen
ProgramID N_Data YearMin YearMax
5002 4370 1991 2025
69 3916 1998 2024
3001 1628 1993 2023
10000 506 1991 2025
3013 412 2003 2024
95 50 1972 2018
115 20 1994 1995
118 11 2005 2021

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program5
95 - Harmful Algal Bloom Marine Observation Network6
115 - Environmental Monitoring Assessment Program7
118 - National Aquatic Resource Surveys, National Coastal Condition Assessment4
3001 - Lagoon Watch (Formerly Marine Discovery Center)8
3013 - Seagrass (SJRWMD)9
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Dissolved Oxygen Saturation - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average dissolved oxygen saturation over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen saturation values measured in the field (circles) are included in the plot.
Scatter plot of monthly average dissolved oxygen saturation over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen saturation values measured in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Dissolved Oxygen Saturation
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly increasing trend 4246 33 1993 - 2025 79.5 0.6805 18.7173 2.785 0

Monthly average dissolved oxygen saturation increased by 2.79% per year.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Dissolved Oxygen Saturation
ProgramID N_Data YearMin YearMax
5002 1924 1995 2024
3001 1608 1993 2023
10000 485 1995 2025
3013 230 2014 2024

Program names:

3001 - Lagoon Watch (Formerly Marine Discovery Center)8
3013 - Seagrass (SJRWMD)9
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

pH - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average pH over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only pH values measured in the field (circles) are included in the plot.
Scatter plot of monthly average pH over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only pH values measured in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for pH
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly decreasing trend 9883 36 1972 - 2025 8.01 -0.1383 8.1471 -0.0031 0.0001

Monthly average pH decreased by less than 0.01 pH units per year.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for pH
ProgramID N_Data YearMin YearMax
69 3848 1998 2024
5002 3490 1991 2025
3001 1611 1993 2023
10000 466 1991 2025
3013 400 2003 2024
95 59 1972 2018
115 16 1994 1995

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program5
95 - Harmful Algal Bloom Marine Observation Network6
115 - Environmental Monitoring Assessment Program7
3001 - Lagoon Watch (Formerly Marine Discovery Center)8
3013 - Seagrass (SJRWMD)9
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Salinity - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average salinity over time. If the time series included ten or more years of discrete observations, significant (blue) or non-significant (magenta) trend lines are also shown. Discrete salinity values derived from grab samples analyzed in the field (circles) or the laboratory (triangles) are both included in the plot.
Scatter plot of monthly average salinity over time. If the time series included ten or more years of discrete observations, significant (blue) or non-significant (magenta) trend lines are also shown. Discrete salinity values derived from grab samples analyzed in the field (circles) or the laboratory (triangles) are both included in the plot.
Seasonal Kendall-Tau Trend Analysis for Salinity
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
All Significantly increasing trend 11191 36 1972 - 2025 32.8 0.1367 30.5448 0.0666 0.0001

Monthly average salinity increased by 0.07 ppt per year.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Salinity
ProgramID N_Data YearMin YearMax
5002 4358 1991 2025
69 4134 1997 2024
3001 1619 1993 2023
10000 464 1991 2025
3013 456 2003 2024
3016 81 2013 2013
95 62 1972 2018
115 19 1994 1995
118 8 2021 2021

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program5
95 - Harmful Algal Bloom Marine Observation Network6
115 - Environmental Monitoring Assessment Program7
118 - National Aquatic Resource Surveys, National Coastal Condition Assessment4
3001 - Lagoon Watch (Formerly Marine Discovery Center)8
3013 - Seagrass (SJRWMD)9
3016 - Lake Worth Lagoon Seagrass Mapping Project10
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Secchi Depth - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average Secchi depth over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Secchi depth is only measured in the field (circles).
Scatter plot of monthly average Secchi depth over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Secchi depth is only measured in the field (circles).
Seasonal Kendall-Tau Trend Analysis for Secchi Depth
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field No significant trend 6486 33 1993 - 2025 -1 -0.0119 -1.101 -0.0004 0.7744

Secchi depth showed no detectable trend between 1993 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Secchi Depth
ProgramID N_Data YearMin YearMax
69 4153 1997 2024
3001 1188 1993 2023
5002 557 2000 2025
3013 399 2003 2024
10000 176 1994 2025
3016 81 2013 2013

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program5
3001 - Lagoon Watch (Formerly Marine Discovery Center)8
3013 - Seagrass (SJRWMD)9
3016 - Lake Worth Lagoon Seagrass Mapping Project10
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Total Nitrogen - Discrete

Total Nitrogen Calculation:

The logic for calculated Total Nitrogen was provided by Kevin O’Donnell and colleagues at FDEP (with the help of Jay Silvanima, Watershed Monitoring Section). The following logic is used, in this order, based on the availability of specific nitrogen components.

  1. TN = TKN + NO3O2;
  2. TN = TKN + NO3 + NO2;
  3. TN = ORGN + NH4 + NO3O2;
  4. TN = ORGN + NH4 + NO2 + NO3;
  5. TN = TKN + NO3;
  6. TN = ORGN + NH4 + NO3;

Additional Information:

  • Rules for use of sample fraction:
    • Florida Department of Environmental Protection (FDEP) report that if both “Total” and “Dissolved” components are reported, only “Total” is used. If the total is not reported, then the dissolved components are used as a best available replacement.
    • Total nitrogen calculations are done using nitrogen components with the same sample fraction, nitrogen components with mixed total/dissolved sample fractions are not used. In other words, total nitrogen can be calculated when TKN and NO3O2 are both total sample fractions, or when both are dissolved sample fractions. Future calculations of total nitrogen values may be based on components with mixed sample fractions.
  • Values inserted into data:
    • ParameterName = “Total Nitrogen”
    • SEACAR_QAQCFlagCode = “1Q”
    • SEACAR_QAQC_Description = “SEACAR Calculated”

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average total nitrogen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only nitrogen values obtained from laboratory analyses (triangles) are included in the plot.
Scatter plot of monthly average total nitrogen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only nitrogen values obtained from laboratory analyses (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Total Nitrogen
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 691 25 2000 - 2025 0.256 0.0281 0.2327 0 0.7453

Total nitrogen showed no detectable trend between 2000 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Total Nitrogen
ProgramID N_Data YearMin YearMax
5002 738 1991 2025
10000 85 2003 2019
103 8 2005 2006

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Total Phosphorus - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average total phosphorus over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only phosphorus values obtained from laboratory analyses (triangles) are included in the plot.
Scatter plot of monthly average total phosphorus over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only phosphorus values obtained from laboratory analyses (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Total Phosphorus
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 1121 35 1991 - 2025 0.026 -0.0416 0.0254 -0.0001 0.4311

Total phosphorus showed no detectable trend between 1991 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Total Phosphorus
ProgramID N_Data YearMin YearMax
5002 935 1991 2025
10000 197 1991 2025
103 8 2005 2006

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Total Suspended Solids - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average total suspended solids (TSS) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only TSS values obtained from laboratory analyses (triangles) are included in the plot.
Scatter plot of monthly average total suspended solids (TSS) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only TSS values obtained from laboratory analyses (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Total Suspended Solids
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 1249 32 1994 - 2025 6 -0.0697 5.9417 -0.03 0.1123

Total suspended solids showed no detectable trend between 1994 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Total Suspended Solids
ProgramID N_Data YearMin YearMax
5002 1069 1994 2025
10000 185 1994 2025

Program names:

5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Turbidity - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average turbidity over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only turbidity values measured in the laboratory (triangles) are included in the plot.
Scatter plot of monthly average turbidity over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only turbidity values measured in the laboratory (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Turbidity
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly increasing trend 932 35 1991 - 2025 2.3 0.1298 1.5738 0.026 0.0108

Monthly average turbidity increased by 0.03 NTU per year, indicating a decrease in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Turbidity
ProgramID N_Data YearMin YearMax
5002 733 1991 2025
10000 199 1991 2025
3013 138 2004 2022
103 4 2005 2006

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
3013 - Seagrass (SJRWMD)9
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Water Temperature - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average water temperature over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only water temperature measurements taken in the field (circles) are included in the plot.
Scatter plot of monthly average water temperature over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only water temperature measurements taken in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Water Temperature
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly increasing trend 10942 36 1972 - 2025 25.5 0.2328 23.718 0.0409 0

Monthly average water temperature increased by 0.04°C per year.

Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Water Temperature
ProgramID N_Data YearMin YearMax
5002 4377 1991 2025
69 4160 1997 2024
3001 1628 1993 2023
3013 457 2003 2024
10000 195 1991 2019
3016 81 2013 2013
95 64 1972 2018
115 16 1994 1995

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program5
95 - Harmful Algal Bloom Marine Observation Network6
115 - Environmental Monitoring Assessment Program7
3001 - Lagoon Watch (Formerly Marine Discovery Center)8
3013 - Seagrass (SJRWMD)9
3016 - Lake Worth Lagoon Seagrass Mapping Project10
5002 - Florida STORET / WIN1
10000 - RiverKeeper2

Water Quality - Continuous

The following files were used in the continuous analysis:

  • Combined_WQ_WC_NUT_cont_Dissolved_Oxygen_NE-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Dissolved_Oxygen_Saturation_NE-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_pH_NE-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Salinity_NE-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Turbidity_NE-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Water_Temperature_NE-2025-Sep-19.txt

Continuous monitoring locations in Jensen Beach to Jupiter Inlet Aquatic Preserve

Station overview for Continuous parameters by Program
ProgramID ProgramLocationID Years of Data Use in Analysis Parameters
7 02253800 3 FALSE Sal , TempW

Program names:

7 - National Water Information System11

Map showing continuous water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. Sites marked as Use In Analysis (green) are featured in this report.
Map showing continuous water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. Sites marked as Use In Analysis (green) are featured in this report.

Salinity - Continuous

Scatter plot of monthly average salinity over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average salinity over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Salinity - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
02253800 Insufficient data to calculate trend 1213 3 2001 - 2003 33 - - - -

There was insufficient data to fit a model for one location.

Map showing location of salinity continuous water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of salinity continuous water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Water Temperature - Continuous

Scatter plot of monthly average water temperature over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average water temperature over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Water Temperature - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
02253800 Insufficient data to calculate trend 1186 3 2001 - 2003 27.1 - - - -

There was insufficient data to fit a model for one location.

Map showing location of water temperature continuous water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of water temperature continuous water quality sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Submerged Aquatic Vegetation

The data file used is: All_SAV_Parameters-2025-Sep-04.txt

Submerged aquatic vegetation (SAV) refers to plants and plant-like macroalgae species that live entirely underwater. The two primary categories of SAV inhabiting Florida estuaries are benthic macroalgae and seagrasses. They often grow together in dense beds or meadows that carpet the seafloor. Macroalgae include multicellular species of green, red and brown algae that often live attached to the substrate by a holdfast. They tend to grow quickly and can tolerate relatively high nutrient levels, making them a threat to seagrasses and other benthic habitats in areas with poor water quality. In contrast, seagrasses are grass-like, vascular, flowering plants that are attached to the seafloor by extensive root systems. Seagrasses occur throughout the coastal areas of Florida, including protected bays and lagoons as well as deeper offshore waters on the continental shelf. Seagrasses have taken advantage of the broad, shallow shelf and clear water to produce two of the most extensive seagrass beds anywhere in continental North America.

Parameters

Percent Cover measures the fraction of an area of seafloor that is covered by SAV, usually estimated by evaluating multiple small areas of seafloor. Percent cover is often estimated for total SAV, individual types of vegetation (seagrass, attached algae, drift algae) and individual species.

Frequency of Occurrence was calculated as the number of times a taxon was observed in a year divided by the number of sampling events, multiplied by 100. Analysis is conducted at the quadrat level and is inclusive of all quadrats (i.e., quadrats evaluated using Braun-Blanquet, modified Braun-Blanquet, and percent cover.”

Species

Turtle grass (Thalassia testudinum) is the largest of the Florida seagrasses, with longer, thicker blades and deeper root structures than any of the other seagrasses. It is considered a climax seagrass species.

Shoal grass (Halodule wrightii) is an early colonizer of vegetated areas and usually grows in water too shallow for other species except widgeon grass. It can often tolerate larger salinity ranges than other seagrass species. Shoal grass is characterized by thin, flat blades, that are narrower than turtle grass blades.

Manatee grass (Syringodium filiforme) is easily recognizable because its leaves are thin and cylindrical instead of the flat, ribbon-like form shared by many other seagrass species. The leaves can grow up to half a meter in length. Manatee grass is usually found in mixed seagrass beds or small, dense monospecific patches.

Widgeon grass (Ruppia maritima) grows in both fresh and salt water and is widely distributed throughout Florida’s estuaries in less saline areas, particularly in inlets along the east coast. This species resembles shoal grass in certain environments but can be identified by the pointed tips of its leaves.

Three species of Halophila spp. are found in Florida - Star grass (Halophila engelmannii), Paddle grass (Halophila decipiens), and Johnson’s seagrass (Halophila johnsonii). These are smaller, more fragile seagrasses than other Florida species and are considered ephemeral. They grow along a single long rhizome, with short blades. These species are not well-studied, although surveys are underway to define their ecological roles.

Notes

Star grass, Paddle grass, and Johnson’s seagrass will be grouped together and listed as Halophila spp. in the following managed areas. This is because several surveys did not specify to the species level:

  • Banana River Aquatic Preserve

  • Indian River-Malabar to Vero Beach Aquatic Preserve

  • Indian River-Vero Beach to Ft. Pierce Aquatic Preserve

  • Jensen Beach to Jupiter Inlet Aquatic Preserve

  • Loxahatchee River-Lake Worth Creek Aquatic Preserve

  • Mosquito Lagoon Aquatic Preserve

  • Biscayne Bay Aquatic Preserve

  • Florida Keys National Marine Sanctuary

Maps showing the temporal scope of SAV sampling sites within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve by Program name.
Maps showing the temporal scope of SAV sampling sites within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve by Program name.

Click here to view spatio-temporal plots on GitHub.

Sampling locations by Program:

Map showing SAV sampling sites within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The point size reflects the number of samples at a given sampling site.
Map showing SAV sampling sites within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The point size reflects the number of samples at a given sampling site.
Program Information for Submerged Aquatic Vegetation
ProgramID N-Data YearMin YearMax method Sample Locations
3013 46129 1994 2024 Percent Cover 18
3013 55189 1994 2024 Percent Occurrence 18
3017 5204 2007 2024 Percent Occurrence 1

Program names:

3013 - Seagrass (SJRWMD)9
3013 - Seagrass (SJRWMD)9
3017 - Loxahatchee River District Bi-Monthly Seagrass Monitoring12

Scatter plots of median percent cover of submerged aquatic vegetation over time by group. Plots for time series that included five or more years of observations show the estimated trend as a blue line.
Scatter plots of median percent cover of submerged aquatic vegetation over time by group. Plots for time series that included five or more years of observations show the estimated trend as a blue line.
Trends in median percent cover for various seagrass species in Jensen Beach to Jupiter Inlet Aquatic Preserve - simplified
Trends in median percent cover for various seagrass species in Jensen Beach to Jupiter Inlet Aquatic Preserve - simplified
Percent Cover Trend Analysis for Jensen Beach to Jupiter Inlet Aquatic Preserve
CommonName Trend Significance (0.05) Period of Record LME-Intercept LME-Slope p
Drift algae Insufficient data to calculate trend - - - -
Shoal grass Significantly decreasing trend 1997 - 2024 9.297111 -0.2128686 0.0040517
Halophila spp. Significantly decreasing trend 1997 - 2024 1.709602 -0.0289760 0.0448825
Widgeon grass Model did not fit the available data 1997 - 2024 - - -
Manatee grass Significantly decreasing trend 1997 - 2024 17.012102 -0.6016666 0.0002352
Turtle grass No significant trend 1997 - 2024 3.150787 -0.0902734 0.0629403
Total SAV Significantly decreasing trend 1994 - 2024 33.182068 -0.9324729 0.0000000
Total seagrass Insufficient data to calculate trend - - - -

Annual decreases in percent cover were observed for total SAV (-0.9%), Halophila spp. (-0.0%), manatee grass (-0.6%), and shoal grass (-0.2%). No detectable change in percent cover was observed for turtle grass. Trends in percent cover could not be evaluated for total seagrass and drift algae due to insufficient data, and the model could not be fitted for widgeon grass.

Frequency of occurrence for various seagrass species in Jensen Beach to Jupiter Inlet Aquatic Preserve
Frequency of occurrence for various seagrass species in Jensen Beach to Jupiter Inlet Aquatic Preserve

SAV Water Column Analysis

The following parameters are available for Jensen Beach to Jupiter Inlet Aquatic Preserve within the SAV_WC_Report:

  • Colored Disolved Organic Matter

  • Chlorophyll a

  • Dissolved Oxygen

  • Dissolved Oxygen Saturation

  • pH

  • Salinity

  • Secchi Depth

  • Water Temperature

  • Total Nitrogen

  • Total Suspended Solids

  • Turbidity

Access the reports here: DRAFT_SAV_WC_Report_2024-11-20.pdf

Coral Reef

The data file used is: All_CORAL_Parameters-2025-Sep-04.txt
Species Richness

Line graph of annual average species richness of grazers and reef-dependent species over time. If the time series included more than one year of observations, a line connects the data points for visualization.
Line graph of annual average species richness of grazers and reef-dependent species over time. If the time series included more than one year of observations, a line connects the data points for visualization.
Coral Species Richness
Sample Count Number of Years Period of Record Median N of Taxa Mean N of Taxa
25 6 2008 - 2014 2 1.92

The median annual number of taxa was 2 based on 25 observations collected between 2008 and 2014.

Map showing location of coral species richness sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of coral species richness sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Oyster

The data file used is: All_OYSTER_Parameters-2025-Sep-04.txt

Percent Live

Natural

Scatter plot of percent live oysters over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Scatter plot of percent live oysters over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Model results for Oyster Percent Live - Natural
Shell Type Habitat Type Trend Status Estimate Standard Error Credible Interval
Live Oysters Natural Significantly decreasing trend -2.48 0.43 -2.27 to -2.69

For natural reefs, percent live cover decreased by an average of 2.48% per year.

Map showing location of oyster percent live sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of oyster percent live sampling locations within the boundaries of Jensen Beach to Jupiter Inlet Aquatic Preserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Species list

Bare substrate Halophila engelmannii1 Syringodium filiforme1
Caulerpa1 Halophila johnsonii1 Thalassia testudinum1
Drift algae1 Pterois miles2 Total macroalgae1
Halodule wrightii1 Pterois volitans2 Total SAV1
Halophila decipiens1 Ruppia maritima1 Total seagrass1

1 - Submerged Aquatic Vegetation, 2 - Coral Reef - Species Richness, 3 - Coral Reef - Percent Cover

References

1.
Florida Department of Environmental Protection (DEP). Florida STORET / WIN. (2024).
2.
Loxahatchee River District. RiverKeeper. (2024).
3.
U.S. Environmental Protection Agency (EPA). EPA STOrage and RETrieval Data Warehouse (STORET)/WQX. (2023).
4.
U.S. Environmental Protection Agency (EPA); Office of Water; National Oceanic and Atmospheric Administration (NOAA); U.S. Geological Survey (USGS); U.S. Fish and Wildlife Service (USFWS); National Estuary Program (NEP); coastal states. National Aquatic Resource Surveys, National Coastal Condition Assessment. (2021).
5.
Florida Fish and Wildlife Conservation Commission (FWC). Fisheries-Independent Monitoring (FIM) Program. (2022).
6.
Florida Fish and Wildlife Conservation Commission (FWC); Florida Fish and Wildlife Research Institute (FWRI). Harmful Algal Bloom Marine Observation Network. (2018).
7.
U.S. Environmental Protection Agency (EPA); Office of Research and Development. Environmental Monitoring Assessment Program. (2004).
8.
Volusia County (Florida); Marine Discovery Center. Lagoon Watch (Formerly Marine Discovery Center). (2023).
9.
St. Johns River Water Management District (SJRWMD). Seagrass (SJRWMD). (2023).
10.
Palm Beach County Department of Environmental Resources Management. Lake Worth Lagoon Seagrass Mapping Project. (2013).
11.
U.S. Geological Survey (USGS). National Water Information System. (2024).
12.
Loxahatchee River District; Wildpine Ecological Laboratory. Loxahatchee River District Bi-Monthly Seagrass Monitoring. (2023).