Funding & Acknowledgements

The data used in this analysis is from the Export Standardized Tables in the SEACAR Data Discovery Interface (DDI). Documents and information available through the SEACAR DDI are owned by the data provider(s) and users are expected to provide appropriate credit following accepted citation formats. Users are encouraged to access data to maximize utilization of gained knowledge, reducing redundant research and facilitating partnerships and scientific innovation.

With respect to documents and information available from SEACAR DDI, neither the State of Florida nor the Florida Department of Environmental Protection makes any warranty, expressed or implied, including the warranties of merchantability and fitness for a particular purpose arising out of the use or inability to use the data, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights.

This report was funded in part, through a grant agreement from the Florida Department of Environmental Protection, Florida Coastal Management Program, by a grant provided by the Office for Coastal Management under the Coastal Zone Management Act of 1972, as amended, National Oceanic and Atmospheric Administration. The views, statements, findings, conclusions and recommendations expressed herein are those of the author(s) and do not necessarily reflect the views of the State of Florida, NOAA or any of their sub agencies.

Published: 2025-10-08

Threshold Filtering

Threshold filters, following the guidance of Florida Department of Environmental Protection’s (FDEP) Division of Environmental Assessment and Restoration (DEAR) are used to exclude specific results values from the SEACAR Analysis. Based on the threshold filters, Quality Assurance / Quality Control (QAQC) Flags are inserted into the SEACAR_QAQCFlagCode and SEACAR_QAQC_Description columns of the export data. The Include column indicates whether the QAQC Flag will also indicate that data are excluded from analysis. No data are excluded from the data export, but the analysis scripts can use the Include column to exclude data (1 to include, 0 to exclude).

Continuous Water Quality threshold values
Parameter Name Units Low Threshold High Threshold
Dissolved Oxygen mg/L -0.000001 50
Dissolved Oxygen Saturation % -0.000001 500
Salinity ppt -0.000001 70
Turbidity NTU -0.000001 4000
Water Temperature Degrees C -5.000000 45
pH None 2.000000 14
Discrete Water Quality threshold values
Parameter Name Units Low Threshold High Threshold
Ammonia, Un-ionized (NH3) mg/L - -
Ammonium, Filtered (NH4) mg/L - -
Chlorophyll a, Corrected for Pheophytin ug/L - -
Chlorophyll a, Uncorrected for Pheophytin ug/L - -
Colored Dissolved Organic Matter PCU - -
Dissolved Oxygen mg/L -0.000001 25
Dissolved Oxygen Saturation % -0.000001 310
Fluorescent Dissolved Organic Matter QSE - -
Light Extinction Coefficient m^-1 - -
NO2+3, Filtered mg/L - -
Nitrate (NO3) mg/L - -
Nitrite (NO2) mg/L - -
Nitrogen, organic mg/L - -
Phosphate, Filtered (PO4) mg/L - -
Salinity ppt -0.000001 70
Secchi Depth m 0.000001 50
Specific Conductivity mS/cm 0.005000 100
Total Kjeldahl Nitrogen mg/L - -
Total Nitrogen mg/L - -
Total Nitrogen mg/L - -
Total Phosphorus mg/L - -
Total Suspended Solids mg/L - -
Turbidity NTU - -
Water Temperature Degrees C 3.000000 40
pH None 2.000000 13
Quality Assurance Flags inserted based on threshold checks listed in Table 1 and 2
SEACAR QAQC Description Include SEACAR QAQCFlagCode
Exceeds maximum threshold 0 2Q
Below minimum threshold 0 4Q
Within threshold tolerance 1 6Q
No defined thresholds for this parameter 1 7Q

Value Qualifiers

Value qualifier codes included within the data are used to exclude certain results from the analysis. The data are retained in the data export files, but the analysis uses the Include column to filter the results.

STORET and WIN value qualifier codes

Value qualifier codes from STORET and WIN data are examined with the database and used to populate the Include column in data exports.

Value Qualifier codes excluded from analysis
Qualifier Source Value Qualifier Include MDL Description
STORET-WIN H 0 0 Value based on field kit determination; results may not be accurate
STORET-WIN J 0 0 Estimated value
STORET-WIN V 0 0 Analyte was detected at or above method detection limit
STORET-WIN Y 0 0 Lab analysis from an improperly preserved sample; data may be inaccurate

Discrete Water Quality Value Qualifiers

The following value qualifiers are highlighted in the Discrete Water Quality section of this report. An exception is made for Program 476 - Charlotte Harbor Estuaries Volunteer Water Quality Monitoring Network and data flagged with Value Qualifier H are included for this program only.

H - Value based on field kit determiniation; results may not be accurate. This code shall be used if a field screening test (e.g., field gas chromatograph data, immunoassay, or vendor-supplied field kit) was used to generate the value and the field kit or method has not been recognized by the Department as equivalent to laboratory methods.

I - The reported value is greater than or equal to the laboratory method detection limit but less than the laboratory practical quantitation limit.

Q - Sample held beyond the accepted holding time. This code shall be used if the value is derived from a sample that was prepared or analyzed after the approved holding time restrictions for sample preparation or analysis.

S - Secchi disk visible to bottom of waterbody. The value reported is the depth of the waterbody at the location of the Secchi disk measurement.

U - Indicates that the compound was analyzed for but not detected. This symbol shall be used to indicate that the specified component was not detected. The value associated with the qualifier shall be the laboratory method detection limit. Unless requested by the client, less than the method detection limit values shall not be reported

Systemwide Monitoring Program (SWMP) value qualifier codes

Value qualifier codes from the SWMP continuous program are examined with the database and used to populate the Include column in data exports. SWMP Qualifier Codes are indicated by QualifierSource=SWMP.

SWMP Value Qualifier codes
Qualifier Source Value Qualifier Include Description
SWMP -1 1 Optional parameter not collected
SWMP -2 0 Missing data
SWMP -3 0 Data rejected due to QA/QC
SWMP -4 0 Outside low sensor range
SWMP -5 0 Outside high sensor range
SWMP 0 1 Passed initial QA/QC checks
SWMP 1 0 Suspect data
SWMP 2 1 Reserved for future use
SWMP 3 1 Calculated data: non-vented depth/level sensorcorrection for changes in barometric pressure
SWMP 4 1 Historical: Pre-auto QA/QC
SWMP 5 1 Corrected data

Water Column

The water column habitat extends from the water’s surface to the bottom sediments, and it’s where fish, dolphins, crabs and people swim! So much life makes its home in the water column that the health of marine and coastal ecosystems, as well as human economies, depend on the condition of this vulnerable habitat. Local patterns of rainfall, temperature, winds and currents can rapidly change the condition of the water column, while global influences such as El Niño/La Niña, large-scale fluctuation in sea temperatures and climate change can have long-term effects. Inputs from the prosperity of our day-to-day lives including farming, mining and forestry, and emissions from power generation, automobiles and water treatment can also alter the health of the water column. Acting alone or together, each input can have complex and lasting effects on habitats and ecosystems.


SEACAR evaluates water column health with several essential parameters. These include nutrient surveys of nitrogen and phosphorus, and water quality assessments of salinity, dissolved oxygen, pH, and water temperature. Water clarity is evaluated with Secchi depth, turbidity, levels of chlorophyll a, total suspended solids, and colored dissolved organic matter. Additionally, the richness of nekton is indicated by the abundance of free-swimming fishes and macroinvertebrates like crabs and shrimps.

Seasonal Kendall-Tau Analysis

Indicators must have a minimum of five to ten years, depending on the habitat, of data within the geographic range of the analysis to be included in the analysis. Ten years of data are required for discrete parameters, and five years of data are required for continuous parameters. If there are insufficient years of data, the number of years of data available will be noted and labeled as “insufficient data to conduct analysis”. Further, for the preferred Seasonal Kendall-Tau test, there must be data from at least two months in common across at least two consecutive years within the RCP managed area being analyzed. Values that pass both of these tests will be included in the analysis and be labeled as Use_In_Analysis = TRUE. Any that fail either test will be excluded from the analyses and labeled as Use_In_Analysis = FALSE. The points for all Water Column plots displayed in this section are monthly averages. Trend significance will be denoted as “Significant Trend” (when p < 0.05), or “Non-significant Trend” (when p >= 0.05). Any parameters with insufficient data to perform Seasonal Kendall-Tau test will have their monthly averages plotted without a corresponding trend line.

Water Quality - Discrete

The following files were used in the discrete analysis:

  • Combined_WQ_WC_NUT_Chlorophyll_a_corrected_for_pheophytin-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Chlorophyll_a_uncorrected_for_pheophytin-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Colored_dissolved_organic_matter_CDOM-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Dissolved_Oxygen-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Dissolved_Oxygen_Saturation-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_pH-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Salinity-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Secchi_Depth-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Total_Nitrogen-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Total_Phosphorus-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Total_Suspended_Solids_TSS-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Turbidity-2025-Sep-04.txt

  • Combined_WQ_WC_NUT_Water_Temperature-2025-Sep-04.txt

Chlorophyll a, Corrected for Pheophytin - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average levels of chlorophyll a, corrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Scatter plot of monthly average levels of chlorophyll a, corrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Seasonal Kendall-Tau Trend Analysis for Chlorophyll a, Corrected for Pheophytin
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly increasing trend 9193 27 1999 - 2025 7.7 0.3418 4.0138 0.3249 0

Monthly average chlorophyll a, corrected for pheophytin, increased by 0.32 µg/L per year, indicating a decrease in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Chlorophyll a, Corrected for Pheophytin
ProgramID N_Data YearMin YearMax
355 8149 2002 2025
5002 1162 1999 2025

Program names:

355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
5002 - Florida STORET / WIN2

Chlorophyll a, Uncorrected for Pheophytin - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average levels of chlorophyll a, uncorrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Scatter plot of monthly average levels of chlorophyll a, uncorrected for pheophytin, over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed chlorophyll a (triangles) is included in the plot.
Seasonal Kendall-Tau Trend Analysis for Chlorophyll a, Uncorrected for Pheophytin
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly increasing trend 4903 25 2000 - 2025 10 0.1977 6.2211 0.3189 0

Monthly average chlorophyll a, uncorrected for pheophytin, increased by 0.32 µg/L per year, indicating a decrease in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Chlorophyll a, Uncorrected for Pheophytin
ProgramID N_Data YearMin YearMax
355 4596 2007 2025
5002 385 2007 2025
514 85 2007 2008
103 17 2000 2019
118 10 2000 2010
115 6 2000 2004

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
118 - National Aquatic Resource Surveys, National Coastal Condition Assessment5
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
514 - Florida LAKEWATCH Program6
5002 - Florida STORET / WIN2

Colored Dissolved Organic Matter - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average colored dissolved organic matter (CDOM) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed CDOM (triangles) is included in the plot.
Scatter plot of monthly average colored dissolved organic matter (CDOM) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only laboratory-analyzed CDOM (triangles) is included in the plot.
Seasonal Kendall-Tau Trend Analysis for Colored Dissolved Organic Matter
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly increasing trend 180 13 2007 - 2025 22 0.1459 9.6302 1.98 0.0133

Monthly average colored dissolved organic matter increased by 1.98 PCU per year, indicating a decrease in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Colored Dissolved Organic Matter
ProgramID N_Data YearMin YearMax
5002 160 2017 2025
514 26 2007 2008
103 7 2009 2019

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
514 - Florida LAKEWATCH Program6
5002 - Florida STORET / WIN2

Dissolved Oxygen - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average dissolved oxygen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen values measured in the field (circles) are included in the plot.
Scatter plot of monthly average dissolved oxygen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen values measured in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Dissolved Oxygen
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field No significant trend 83315 34 1992 - 2025 7.5 -0.0692 7.665 -0.0079 0.0582

Dissolved oxygen showed no detectable trend between 1992 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Dissolved Oxygen
ProgramID N_Data YearMin YearMax
69 43854 1998 2024
5002 32111 1995 2025
129 4028 2000 2024
355 3843 2003 2025
95 410 1995 2018
557 222 2006 2023
118 78 2000 2020
103 34 2014 2019
115 28 1992 2004
119 14 1994 1994
5071 4 2017 2017

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program7
95 - Harmful Algal Bloom Marine Observation Network8
103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
118 - National Aquatic Resource Surveys, National Coastal Condition Assessment5
119 - National Status and Trends Bioeffects program9
129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
5002 - Florida STORET / WIN2
5071 - Oyster shell heights and taxonomic diversity in 2015-2017 among previously documented oiled and non-oiled reefs in Louisiana, Alabama, and the Florida panhandle12

Dissolved Oxygen Saturation - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average dissolved oxygen saturation over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen saturation values measured in the field (circles) are included in the plot.
Scatter plot of monthly average dissolved oxygen saturation over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only dissolved oxygen saturation values measured in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Dissolved Oxygen Saturation
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field No significant trend 7037 26 2000 - 2025 91.5 -0.0551 90.4781 -0.09 0.1842

Dissolved oxygen saturation showed no detectable trend between 2000 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Dissolved Oxygen Saturation
ProgramID N_Data YearMin YearMax
129 4010 2000 2024
355 2492 2003 2023
5002 574 2003 2025

Program names:

129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
5002 - Florida STORET / WIN2

pH - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average pH over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only pH values measured in the field (circles) are included in the plot.
Scatter plot of monthly average pH over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only pH values measured in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for pH
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly decreasing trend 67538 35 1964 - 2025 7.98 -0.3282 8.2842 -0.0099 0

Monthly average pH decreased by 0.01 pH units per year.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for pH
ProgramID N_Data YearMin YearMax
69 43994 1998 2024
5002 19248 1995 2025
355 2618 2011 2025
129 2321 2000 2024
95 305 1964 2018
557 209 2006 2023
558 38 2008 2013
103 29 2014 2019
115 28 1992 2004

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program7
95 - Harmful Algal Bloom Marine Observation Network8
103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
558 - Franklin County Coastal Waters Seagrass Monitoring13
5002 - Florida STORET / WIN2

Salinity - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average salinity over time. If the time series included ten or more years of discrete observations, significant (blue) or non-significant (magenta) trend lines are also shown. Discrete salinity values derived from grab samples analyzed in the field (circles) or the laboratory (triangles) are both included in the plot.
Scatter plot of monthly average salinity over time. If the time series included ten or more years of discrete observations, significant (blue) or non-significant (magenta) trend lines are also shown. Discrete salinity values derived from grab samples analyzed in the field (circles) or the laboratory (triangles) are both included in the plot.
Seasonal Kendall-Tau Trend Analysis for Salinity
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
All Significantly decreasing trend 96041 36 1964 - 2024 16.8 -0.1809 21.3048 -0.1161 0

Monthly average salinity decreased by 0.12 ppt per year.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Salinity
ProgramID N_Data YearMin YearMax
69 44205 1998 2024
5002 43876 1995 2024
129 4040 2000 2024
355 3721 2003 2024
95 586 1964 2018
4044 280 2007 2023
557 222 2006 2023
558 132 2008 2014
118 79 2015 2020
456 63 2005 2015
115 28 1992 2004
119 14 1994 1994
5071 4 2017 2017

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program7
95 - Harmful Algal Bloom Marine Observation Network8
115 - Environmental Monitoring Assessment Program4
118 - National Aquatic Resource Surveys, National Coastal Condition Assessment5
119 - National Status and Trends Bioeffects program9
129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
456 - Oyster Sentinel14
557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
558 - Franklin County Coastal Waters Seagrass Monitoring13
4044 - NRDA Oyster Cultch Recovery Project15
5002 - Florida STORET / WIN2
5071 - Oyster shell heights and taxonomic diversity in 2015-2017 among previously documented oiled and non-oiled reefs in Louisiana, Alabama, and the Florida panhandle12

Secchi Depth - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average Secchi depth over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Secchi depth is only measured in the field (circles).
Scatter plot of monthly average Secchi depth over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Secchi depth is only measured in the field (circles).
Seasonal Kendall-Tau Trend Analysis for Secchi Depth
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly increasing trend 47555 31 1992 - 2025 -0.8 0.1862 -0.9943 0.0048 0

Monthly average Secchi depth became shallower by less than 0.01 m per year, indicating a decrease in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Secchi Depth
ProgramID N_Data YearMin YearMax
69 43709 1998 2024
129 1997 2000 2024
355 952 2011 2019
5002 487 2003 2025
558 188 2008 2017
557 128 2006 2023
514 80 2007 2008
115 10 1992 2004
103 6 2015 2015

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program7
103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
514 - Florida LAKEWATCH Program6
557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
558 - Franklin County Coastal Waters Seagrass Monitoring13
5002 - Florida STORET / WIN2

Total Nitrogen - Discrete

Total Nitrogen Calculation:

The logic for calculated Total Nitrogen was provided by Kevin O’Donnell and colleagues at FDEP (with the help of Jay Silvanima, Watershed Monitoring Section). The following logic is used, in this order, based on the availability of specific nitrogen components.

  1. TN = TKN + NO3O2;
  2. TN = TKN + NO3 + NO2;
  3. TN = ORGN + NH4 + NO3O2;
  4. TN = ORGN + NH4 + NO2 + NO3;
  5. TN = TKN + NO3;
  6. TN = ORGN + NH4 + NO3;

Additional Information:

  • Rules for use of sample fraction:
    • Florida Department of Environmental Protection (FDEP) report that if both “Total” and “Dissolved” components are reported, only “Total” is used. If the total is not reported, then the dissolved components are used as a best available replacement.
    • Total nitrogen calculations are done using nitrogen components with the same sample fraction, nitrogen components with mixed total/dissolved sample fractions are not used. In other words, total nitrogen can be calculated when TKN and NO3O2 are both total sample fractions, or when both are dissolved sample fractions. Future calculations of total nitrogen values may be based on components with mixed sample fractions.
  • Values inserted into data:
    • ParameterName = “Total Nitrogen”
    • SEACAR_QAQCFlagCode = “1Q”
    • SEACAR_QAQC_Description = “SEACAR Calculated”

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average total nitrogen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only nitrogen values obtained from laboratory analyses (triangles) are included in the plot.
Scatter plot of monthly average total nitrogen over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only nitrogen values obtained from laboratory analyses (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Total Nitrogen
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab No significant trend 4344 29 1992 - 2025 0.63 -0.0717 0.7001 -0.002 0.0911

Total nitrogen showed no detectable trend between 1992 and 2025.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Total Nitrogen
ProgramID N_Data YearMin YearMax
355 3207 2013 2025
5002 1048 1992 2025
514 83 2007 2008
103 18 2000 2006
115 6 2000 2004

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
514 - Florida LAKEWATCH Program6
5002 - Florida STORET / WIN2

Total Phosphorus - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average total phosphorus over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only phosphorus values obtained from laboratory analyses (triangles) are included in the plot.
Scatter plot of monthly average total phosphorus over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only phosphorus values obtained from laboratory analyses (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Total Phosphorus
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly decreasing trend 4692 29 1992 - 2025 0.031 -0.0996 0.0352 -0.0002 0.014

Monthly average total phosphorus decreased by less than 0.01 mg/L per year.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Total Phosphorus
ProgramID N_Data YearMin YearMax
355 3519 2013 2025
5002 1180 1992 2025
514 83 2007 2008
103 24 2000 2015
115 6 2000 2004

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
514 - Florida LAKEWATCH Program6
5002 - Florida STORET / WIN2

Total Suspended Solids - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average total suspended solids (TSS) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only TSS values obtained from laboratory analyses (triangles) are included in the plot.
Scatter plot of monthly average total suspended solids (TSS) over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only TSS values obtained from laboratory analyses (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Total Suspended Solids
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly decreasing trend 4183 29 1992 - 2025 10 -0.1782 14.9479 -0.1667 0

Monthly average total suspended solids decreased by 0.17 mg/L per year, indicating an increase in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Total Suspended Solids
ProgramID N_Data YearMin YearMax
355 3645 2013 2025
5002 739 1992 2025
103 7 2009 2019

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
5002 - Florida STORET / WIN2

Turbidity - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average turbidity over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only turbidity values measured in the laboratory (triangles) are included in the plot.
Scatter plot of monthly average turbidity over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only turbidity values measured in the laboratory (triangles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Turbidity
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Lab Significantly increasing trend 22988 32 1992 - 2025 5.1 0.2687 4.9 0.1673 0

Monthly average turbidity increased by 0.17 NTU per year, indicating a decrease in water clarity.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Turbidity
ProgramID N_Data YearMin YearMax
5002 22983 1992 2025
129 2325 2000 2024
355 1833 2004 2019
4044 112 2021 2023
557 78 2022 2023
103 10 2005 2019

Program names:

103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
4044 - NRDA Oyster Cultch Recovery Project15
5002 - Florida STORET / WIN2

Water Temperature - Discrete

Seasonal Kendall-Tau Trend Analysis

Scatter plot of monthly average water temperature over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only water temperature measurements taken in the field (circles) are included in the plot.
Scatter plot of monthly average water temperature over time. If the time series included ten or more years of discrete observations, a significant (blue) or non-significant (magenta) trend line is also shown. Only water temperature measurements taken in the field (circles) are included in the plot.
Seasonal Kendall-Tau Trend Analysis for Water Temperature
Activity Type Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
Field Significantly increasing trend 96337 37 1964 - 2025 23.4 0.1293 20.8468 0.0212 0.0004

Monthly average water temperature increased by 0.02°C per year.

Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of discrete water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Programs contributing data for Water Temperature
ProgramID N_Data YearMin YearMax
5002 44379 1995 2025
69 44343 1998 2024
129 4033 2000 2024
355 3847 2003 2025
95 537 1964 2018
557 222 2006 2023
558 146 2008 2017
456 63 2005 2015
115 28 1992 2004
119 14 1994 1994
103 5 2014 2019
5071 4 2017 2017

Program names:

69 - Fisheries-Independent Monitoring (FIM) Program7
95 - Harmful Algal Bloom Marine Observation Network8
103 - EPA STOrage and RETrieval Data Warehouse (STORET)/WQX3
115 - Environmental Monitoring Assessment Program4
119 - National Status and Trends Bioeffects program9
129 - Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring10
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1
456 - Oyster Sentinel14
557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
558 - Franklin County Coastal Waters Seagrass Monitoring13
5002 - Florida STORET / WIN2
5071 - Oyster shell heights and taxonomic diversity in 2015-2017 among previously documented oiled and non-oiled reefs in Louisiana, Alabama, and the Florida panhandle12

Water Quality - Continuous

The following files were used in the continuous analysis:

  • Combined_WQ_WC_NUT_cont_Dissolved_Oxygen_NW-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Dissolved_Oxygen_Saturation_NW-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_pH_NW-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Salinity_NW-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Turbidity_NW-2025-Sep-19.txt

  • Combined_WQ_WC_NUT_cont_Water_Temperature_NW-2025-Sep-19.txt

Continuous monitoring locations in Apalachicola National Estuarine Research Reserve

Station overview for Continuous parameters by Program
ProgramID ProgramLocationID Years of Data Use in Analysis Parameters
5 APCF1 21 TRUE TempW
355 apabpwq 6 TRUE DO , DOS , pH , Sal , Turb , TempW
355 apacpwq 24 TRUE DO , DOS , pH , Sal , Turb , TempW
355 apadbwq 24 TRUE DO , DOS , pH , Sal , Turb , TempW
355 apaebwq 29 TRUE Turb
355 apaebwq 31 TRUE DO , DOS , pH , Sal , TempW
355 apaeswq 30 TRUE Turb
355 apaeswq 31 TRUE DO , DOS , pH , Sal , TempW
355 apalmwq 10 TRUE DO , DOS , pH , Sal , Turb , TempW
355 apapcwq 10 TRUE DO , DOS , pH , Sal , Turb , TempW

Program names:

5 - National Data Buoy Center16
355 - Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program1

Map showing continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. Sites marked as Use In Analysis (green) are featured in this report.
Map showing continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. Sites marked as Use In Analysis (green) are featured in this report.

Dissolved Oxygen - Continuous

Scatter plot of monthly average dissolved oxygen over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average dissolved oxygen over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Dissolved Oxygen - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
apapcwq No significant trend 289558 10 2016 - 2025 6.8 -0.02 6.98 -0.01 0.88
apaeswq Significantly decreasing trend 733356 31 1995 - 2025 6.8 -0.13 7.15 -0.02 0.00
apalmwq Significantly decreasing trend 275414 10 2016 - 2025 6.3 -0.20 6.81 -0.05 0.01
apadbwq Significantly decreasing trend 641801 24 2002 - 2025 7.2 -0.14 7.56 -0.02 0.00
apacpwq Significantly increasing trend 636748 24 2002 - 2025 7.1 0.11 7.05 0.01 0.01
apaebwq Significantly decreasing trend 685348 31 1995 - 2025 6.8 -0.30 7.58 -0.06 0.00
apabpwq No significant trend 170534 6 2020 - 2025 6.5 0.06 6.37 0.02 0.55

At one program location, monthly average dissolved oxygen increased by 0.01 mg/L per year. At four program locations, monthly average dissolved oxygen decreased between 0.02 and 0.06 mg/L per year. No detectable change in monthly average dissolved oxygen was observed at two locations.

Map showing location of dissolved oxygen continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of dissolved oxygen continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Dissolved Oxygen Saturation - Continuous

Scatter plot of monthly average dissolved oxygen saturation over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average dissolved oxygen saturation over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Dissolved Oxygen Saturation - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
apabpwq No significant trend 170534 6 2020 - 2025 76.2 0.17 73.51 0.47 0.12
apalmwq Significantly decreasing trend 275950 10 2016 - 2025 74.6 -0.21 77.22 -0.64 0.01
apaebwq Significantly decreasing trend 681137 31 1995 - 2025 84.5 -0.26 91.05 -0.67 0.00
apacpwq Significantly increasing trend 638276 24 2002 - 2025 94.1 0.17 92.01 0.21 0.00
apapcwq No significant trend 293014 10 2016 - 2025 93.9 0.03 93.21 0.10 0.64
apaeswq Significantly decreasing trend 734556 31 1995 - 2025 84.2 -0.09 85.63 -0.21 0.02
apadbwq No significant trend 645250 24 2002 - 2025 94.7 -0.08 97.86 -0.12 0.07

At one program location, monthly average dissolved oxygen saturation increased by 0.21% per year. At three program locations, monthly average dissolved oxygen saturation decreased between 0.21 and 0.67% per year. No detectable change in monthly average dissolved oxygen saturation was observed at three locations.

Map showing location of dissolved oxygen saturation continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of dissolved oxygen saturation continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

pH - Continuous

Scatter plot of monthly average pH over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average pH over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for pH - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
apaeswq Significantly decreasing trend 736038 31 1995 - 2025 7.5 -0.12 7.58 -0.01 0.00
apadbwq Significantly decreasing trend 623515 24 2002 - 2025 8.0 -0.13 8.06 0.00 0.00
apalmwq No significant trend 283547 10 2016 - 2025 7.1 -0.13 7.13 -0.01 0.12
apapcwq Significantly decreasing trend 289516 10 2016 - 2025 8.1 -0.34 8.16 -0.02 0.00
apabpwq No significant trend 171276 6 2020 - 2025 7.1 -0.05 7.07 0.00 0.84
apaebwq Significantly decreasing trend 738964 31 1995 - 2025 7.6 -0.12 7.66 -0.01 0.00
apacpwq No significant trend 636294 24 2002 - 2025 8.0 -0.02 8.01 0.00 0.71

At four program locations, monthly average pH decreased between less than 0.01 and 0.02 pH units per year. No detectable change in monthly average pH was observed at three locations.

Map showing location of ph continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of ph continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Salinity - Continuous

Scatter plot of monthly average salinity over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average salinity over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Salinity - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
apalmwq Significantly increasing trend 291127 10 2016 - 2025 0.1 0.18 0.09 0.01 0.02
apaeswq No significant trend 778085 31 1995 - 2025 7.3 0.04 6.97 0.02 0.30
apapcwq No significant trend 291880 10 2016 - 2025 27.0 0.08 26.18 0.12 0.31
apaebwq No significant trend 768387 31 1995 - 2025 9.7 0.03 9.21 0.02 0.46
apacpwq No significant trend 652892 24 2002 - 2025 22.3 0.00 21.85 0.00 1.00
apadbwq No significant trend 640362 24 2002 - 2025 22.2 -0.03 22.03 -0.03 0.52
apabpwq Significantly increasing trend 173086 6 2020 - 2025 0.1 0.26 0.09 0.00 0.03

At two program locations, monthly average salinity increased by less than 0.01 ppt per year at one site and by 0.01 ppt per year at the other. No detectable change in monthly average salinity was observed at five locations.

Map showing location of salinity continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of salinity continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Turbidity - Continuous

Scatter plot of monthly average turbidity over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average turbidity over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Turbidity - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
apaeswq Significantly decreasing trend 721945 30 1996 - 2025 9 -0.13 11.29 -0.09 0.00
apapcwq No significant trend 280348 10 2016 - 2025 7 -0.05 10.67 -0.08 0.55
apalmwq No significant trend 261636 10 2016 - 2025 12 0.13 13.14 0.36 0.11
apaebwq Significantly decreasing trend 656935 27 1997 - 2025 13 -0.17 19.33 -0.18 0.00
apadbwq No significant trend 625446 24 2002 - 2025 10 0.06 16.00 0.07 0.22
apacpwq No significant trend 649942 24 2002 - 2025 8 -0.02 12.90 -0.02 0.69
apabpwq No significant trend 173080 6 2020 - 2025 11 0.05 11.31 0.11 0.74

At two program locations, monthly average turbidity decreased by 0.09 NTU per year at one site and by 0.18 NTU per year at the other. No detectable change in monthly average turbidity was observed at five locations.

Map showing location of turbidity continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of turbidity continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Water Temperature - Continuous

Scatter plot of monthly average water temperature over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Scatter plot of monthly average water temperature over time at continuously monitored program locations. Each location is analyzed separately, with significant (blue) or non-significant (magenta) trend lines shown for time series that included five or more years of observations.
Seasonal Kendall-Tau Results for Water Temperature - All Stations
Station Statistical Trend Sample Count Years with Data Period of Record Median tau Sen Intercept Sen Slope p
APCF1 Significantly increasing trend 1391382 21 2005 - 2025 23.3 0.12 22.98 0.04 0.03
apaeswq Significantly increasing trend 787341 31 1995 - 2025 24.2 0.20 22.82 0.04 0.00
apapcwq No significant trend 295378 10 2016 - 2025 23.4 0.00 23.62 0.00 0.98
apalmwq No significant trend 293385 10 2016 - 2025 22.9 0.00 23.35 0.00 1.00
apabpwq No significant trend 173086 6 2020 - 2025 22.8 0.20 22.24 0.24 0.07
apadbwq Significantly increasing trend 666370 24 2002 - 2025 23.5 0.17 22.89 0.03 0.00
apaebwq Significantly increasing trend 783431 31 1995 - 2025 24.3 0.16 23.03 0.02 0.00
apacpwq Significantly increasing trend 691886 24 2002 - 2025 23.6 0.17 23.05 0.03 0.00

At five program locations, monthly average water temperature increased between 0.02 and 0.04°C per year. No detectable change in monthly average water temperature was observed at three locations.

Map showing location of water temperature continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of water temperature continuous water quality sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Submerged Aquatic Vegetation

The data file used is: All_SAV_Parameters-2025-Sep-04.txt

Submerged aquatic vegetation (SAV) refers to plants and plant-like macroalgae species that live entirely underwater. The two primary categories of SAV inhabiting Florida estuaries are benthic macroalgae and seagrasses. They often grow together in dense beds or meadows that carpet the seafloor. Macroalgae include multicellular species of green, red and brown algae that often live attached to the substrate by a holdfast. They tend to grow quickly and can tolerate relatively high nutrient levels, making them a threat to seagrasses and other benthic habitats in areas with poor water quality. In contrast, seagrasses are grass-like, vascular, flowering plants that are attached to the seafloor by extensive root systems. Seagrasses occur throughout the coastal areas of Florida, including protected bays and lagoons as well as deeper offshore waters on the continental shelf. Seagrasses have taken advantage of the broad, shallow shelf and clear water to produce two of the most extensive seagrass beds anywhere in continental North America.

Parameters

Percent Cover measures the fraction of an area of seafloor that is covered by SAV, usually estimated by evaluating multiple small areas of seafloor. Percent cover is often estimated for total SAV, individual types of vegetation (seagrass, attached algae, drift algae) and individual species.

Frequency of Occurrence was calculated as the number of times a taxon was observed in a year divided by the number of sampling events, multiplied by 100. Analysis is conducted at the quadrat level and is inclusive of all quadrats (i.e., quadrats evaluated using Braun-Blanquet, modified Braun-Blanquet, and percent cover.”

Species

Turtle grass (Thalassia testudinum) is the largest of the Florida seagrasses, with longer, thicker blades and deeper root structures than any of the other seagrasses. It is considered a climax seagrass species.

Shoal grass (Halodule wrightii) is an early colonizer of vegetated areas and usually grows in water too shallow for other species except widgeon grass. It can often tolerate larger salinity ranges than other seagrass species. Shoal grass is characterized by thin, flat blades, that are narrower than turtle grass blades.

Manatee grass (Syringodium filiforme) is easily recognizable because its leaves are thin and cylindrical instead of the flat, ribbon-like form shared by many other seagrass species. The leaves can grow up to half a meter in length. Manatee grass is usually found in mixed seagrass beds or small, dense monospecific patches.

Widgeon grass (Ruppia maritima) grows in both fresh and salt water and is widely distributed throughout Florida’s estuaries in less saline areas, particularly in inlets along the east coast. This species resembles shoal grass in certain environments but can be identified by the pointed tips of its leaves.

Three species of Halophila spp. are found in Florida - Star grass (Halophila engelmannii), Paddle grass (Halophila decipiens), and Johnson’s seagrass (Halophila johnsonii). These are smaller, more fragile seagrasses than other Florida species and are considered ephemeral. They grow along a single long rhizome, with short blades. These species are not well-studied, although surveys are underway to define their ecological roles.

Notes

Star grass, Paddle grass, and Johnson’s seagrass will be grouped together and listed as Halophila spp. in the following managed areas. This is because several surveys did not specify to the species level:

  • Banana River Aquatic Preserve

  • Indian River-Malabar to Vero Beach Aquatic Preserve

  • Indian River-Vero Beach to Ft. Pierce Aquatic Preserve

  • Jensen Beach to Jupiter Inlet Aquatic Preserve

  • Loxahatchee River-Lake Worth Creek Aquatic Preserve

  • Mosquito Lagoon Aquatic Preserve

  • Biscayne Bay Aquatic Preserve

  • Florida Keys National Marine Sanctuary

Maps showing the temporal scope of SAV sampling sites within the boundaries of Apalachicola National Estuarine Research Reserve by Program name.
Maps showing the temporal scope of SAV sampling sites within the boundaries of Apalachicola National Estuarine Research Reserve by Program name.

Click here to view spatio-temporal plots on GitHub.

Sampling locations by Program:

Map showing SAV sampling sites within the boundaries of Apalachicola National Estuarine Research Reserve. The point size reflects the number of samples at a given sampling site.
Map showing SAV sampling sites within the boundaries of Apalachicola National Estuarine Research Reserve. The point size reflects the number of samples at a given sampling site.
Program Information for Submerged Aquatic Vegetation
ProgramID N-Data YearMin YearMax method Sample Locations
557 590 2008 2023 Braun Blanquet 35
997 79 2003 2003 Braun Blanquet 4
558 1402 2009 2017 Percent Cover 32
997 81 2003 2003 Percent Cover 4

Program names:

557 - Central Panhandle Aquatic Preserves Seagrass Monitoring11
558 - Franklin County Coastal Waters Seagrass Monitoring13
997 - Apalachicola Bay Ephemeral SAV Monitoring17
997 - Apalachicola Bay Ephemeral SAV Monitoring17

Scatter plots of median percent cover of submerged aquatic vegetation over time by group. Plots for time series that included five or more years of observations show the estimated trend as a blue line.
Scatter plots of median percent cover of submerged aquatic vegetation over time by group. Plots for time series that included five or more years of observations show the estimated trend as a blue line.
Trends in median percent cover for various seagrass species in Apalachicola National Estuarine Research Reserve - simplified
Trends in median percent cover for various seagrass species in Apalachicola National Estuarine Research Reserve - simplified
Percent Cover Trend Analysis for Apalachicola National Estuarine Research Reserve
CommonName Trend Significance (0.05) Period of Record LME-Intercept LME-Slope p
Drift algae Significantly decreasing trend 2003 - 2023 60.30780 -1.8362646 0.0314670
Shoal grass No significant trend 2008 - 2023 42.98086 -0.2444919 0.7268447
Star grass Insufficient data to calculate trend - - - -
No grass in quadrat Model did not fit the available data 2003 - 2023 - - -
Widgeon grass Insufficient data to calculate trend - - - -
Manatee grass Insufficient data to calculate trend - - - -

An annual decrease in percent cover was observed for drift algae (-1.8%). No detectable change in percent cover was observed for shoal grass. Trends in percent cover could not be evaluated for manatee grass, star grass, and widgeon grass due to insufficient data.

Frequency of occurrence for various seagrass species in Apalachicola National Estuarine Research Reserve
Frequency of occurrence for various seagrass species in Apalachicola National Estuarine Research Reserve

SAV Water Column Analysis

The following parameters are available for Apalachicola National Estuarine Research Reserve within the SAV_WC_Report:

  • Colored Disolved Organic Matter

  • Chlorophyll a

  • Dissolved Oxygen

  • Dissolved Oxygen Saturation

  • pH

  • Salinity

  • Secchi Depth

  • Water Temperature

  • Total Nitrogen

  • Total Suspended Solids

  • Turbidity

Access the reports here: DRAFT_SAV_WC_Report_2024-11-20.pdf

Nekton

The data file used is: All_NEKTON_Parameters-2025-Sep-04.txt

Bar graph(s) of annual average nekton richness over time for species groups occurring in at least 1% of samples. The bar colors represent species groups including bony fishes, cartilaginous fishes, decapod crustaceans (e.g., shrimps, crabs, and lobsters), and cephalopods (e.g., squid). Gear types and sizes are indicated in the panel label.
Bar graph(s) of annual average nekton richness over time for species groups occurring in at least 1% of samples. The bar colors represent species groups including bony fishes, cartilaginous fishes, decapod crustaceans (e.g., shrimps, crabs, and lobsters), and cephalopods (e.g., squid). Gear types and sizes are indicated in the panel label.
Nekton Species Richness
Gear Type Sample Count Number of Years Period of Record Median N of Taxa Mean N of Taxa
Trawl (4.8) 5685 24 2000 - 2024 0.74 1.13

The median annual number of taxa was 0.74 based on 5,685 observations collected by 4.8-meter trawl between 2000 and 2024.

Map showing location of nekton sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of nekton sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Coastal Wetlands

The data file used is: All_CW_Parameters-2025-Sep-04.txt

Line graph of annual average coastal wetlands species richness over time for mangroves and associates (triangles), marsh (squares), and marsh succulents (circles). If the time series by species group included more than one year of observations, a line connects data points for visualization.
Line graph of annual average coastal wetlands species richness over time for mangroves and associates (triangles), marsh (squares), and marsh succulents (circles). If the time series by species group included more than one year of observations, a line connects data points for visualization.
Coastal Wetlands Species Richness
Species Group Sample Count Number of Years Period of Record Median N of Taxa Mean N of Taxa
Mangroves and associates 4 2 2022 - 2023 1.0 1.00
Marsh 144 10 2014 - 2023 1.5 2.08
Marsh succulents 56 10 2014 - 2023 3.0 2.20

Between 2022 and 2023, the median annual number of species for mangroves and associates was 1 based on 4 observations. Between 2014 and 2023, the median annual number of species for marsh was 1.5 based on 144 observations. Between 2014 and 2023, the median annual number of species for marsh succulents was 3 based on 56 observations.

Map showing location of coastal wetlands sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of coastal wetlands sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Oyster

The data file used is: All_OYSTER_Parameters-2025-Sep-04.txt

Density

Natural

Scatter plot of oyster density over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Scatter plot of oyster density over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Model results for Oyster Density - Natural
Shell Type Habitat Type Trend Status Estimate Standard Error Credible Interval
Live Oysters Natural No significant change 1.96 74.38 0.34 to -23.11

For natural reefs, density increased by an average of 2.03 oysters per square meter per year. For restored reefs, density decreased by an average of 11.42 oysters per square meter per year.

Restored

Scatter plot of oyster density over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Scatter plot of oyster density over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Model results for Oyster Density - Restored
Shell Type Habitat Type Trend Status Estimate Standard Error Credible Interval
Live Oysters Restored No significant change -11.95 59.04 -0.03 to 77.11

For natural reefs, density increased by an average of 2.03 oysters per square meter per year. For restored reefs, density decreased by an average of 11.42 oysters per square meter per year.

Map showing location of oyster density sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of oyster density sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Percent Live

Natural

Scatter plot of percent live oysters over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Scatter plot of percent live oysters over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Model results for Oyster Percent Live - Natural
Shell Type Habitat Type Trend Status Estimate Standard Error Credible Interval
Live Oysters Natural Significantly increasing trend 1.69 9.76 0 to 5.27

For natural reefs, percent live cover increased by an average of 1.71% per year. For restored reefs, percent live cover decreased by an average of 1.53% per year.

Restored

Scatter plot of percent live oysters over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Scatter plot of percent live oysters over time. If the time series included five or more years with observations, an estimated trend (blue line) and a 95% credible interval (purple band) may also be plotted. Data points are jittered horizontally to reduce overlap.
Model results for Oyster Percent Live - Restored
Shell Type Habitat Type Trend Status Estimate Standard Error Credible Interval
Live Oysters Restored Significantly decreasing trend -1.54 31.6 -1.15 to -0.36

For natural reefs, percent live cover increased by an average of 1.71% per year. For restored reefs, percent live cover decreased by an average of 1.53% per year.

Map showing location of oyster percent live sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of oyster percent live sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Shell Height

Natural

Model results for Oyster Shell Height - Natural
Shell Type SizeClass Habitat Type Trend Status Estimate Standard Error Credible Interval
Dead Oyster Shells Natural - - - -
Dead Oyster Shells >75mm Natural - - - -
Dead Oyster Shells 25-75mm Natural - - - -
Live Oysters Natural - - - -
Live Oysters >75mm Natural - - - -
Live Oysters 25-75mm Natural No significant change -1.18 4.54 -10.28 to 7.86

For natural reefs, annual average live oyster shell height in the 25-75mm size class decreased by 1.18 mm per year, and there was insufficient data to calculate a trend for live oysters in the ≥75mm size class. For restored reefs, a model could not be fitted for live oysters in either the 25-75mm or the ≥75mm size class. Models are not run on dead oyster shell measurements.

Map showing location of oyster shell height sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.
Map showing location of oyster shell height sampling locations within the boundaries of Apalachicola National Estuarine Research Reserve. The bubble size on the maps above reflect the amount of data available at each sampling site.

Species list

Acanthostracion lactrophyrs3 Fimbristylis spadicea Pagurus longicarpus3
Acanthostracion quadricornis3 Fowlerichthys radiosus3 Pagurus pollicaris3
Acer rubrum Fundulus grandis3 Pagurus spp.3
Acetabularia crenulata1 Fundulus similis3 Palaemon floridanus3
Acetes americanus3 Fundulus spp.3 Palaemon mundusnovus3
Achelous gibbesii3 Galium tinctorium Palaemon pugio3
Achelous spinimanus3 Gambusia holbrooki3 Palaemon spp.3
Achirus lineatus3 Gerres cinereus3 Palaemon vulgaris3
Acipenser oxyrinchus3 Gobiesox strumosus3 Panicum repens
Agalinis maritima Gobiidae spp.3 Panicum virgatum
Albula vulpes3 Gobioides broussonnetii3 Panopeus herbstii3
Alosa alabamae3 Gobionellus oceanicus3 Parablennius marmoreus3
Alosa chrysochloris3 Gobionellus spp.3 Paraclinus marmoratus3
Alosa spp.3 Gobiosoma bosc3 Paralichthyidae spp.3
Alpheus armillatus3 Gobiosoma longipala3 Paralichthys albigutta3
Alpheus estuariensis3 Gobiosoma robustum3 Paralichthys lethostigma3
Alpheus heterochaelis3 Gobiosoma spp.3 Paralichthys spp.3
Alpheus normanni3 Gracilaria sp.1 Paralichthys squamilentus3
Alpheus spp.3 Gunterichthys longipenis3 Parapenaeus politus3
Alternanthera philoxeroides Gymnothorax saxicola3 Paspalum vaginatum2
Aluterus heudelotii3 Gymnura micrura3 Pattalias palustre
Aluterus schoepfii3 Haemulon aurolineatum3 Penaeidae3
Aluterus scriptus3 Haemulon plumierii3 Penaeus aztecus3
Aluterus spp.3 Halichoeres bivittatus3 Penaeus duorarum3
Amaranthus cannabinus Halodule wrightii1 Penaeus setiferus3
Ambidexter symmetricus3 Halophila engelmannii1 Penaeus sp.3
Ameiurus catus3 Harengula jaguana3 Penaeus spp.3
Ameiurus natalis3 Hemicaranx amblyrhynchus3 Peprilus burti3
Ameiurus nebulosus3 Hemipholis elongata Peprilus paru3
Ameiurus spp.3 Hepatus epheliticus3 Peprilus spp.3
Amia calva3 Heterandria formosa3 Percidae spp.3
Ammocrypta bifascia3 Hexapanopeus angustifrons3 Percina nigrofasciata3
Ampelaster carolinianus Hippocampus erectus3 Persea palustris
Anarchopterus criniger3 Hippocampus zosterae3 Persephona mediterranea3
Anchoa cubana3 Hippolyte zostericola3 Persicaria hydropiperoides
Anchoa hepsetus3 Hydrilla verticillata Petrolisthes armatus3
Anchoa lyolepis3 Hydrocotyle umbellata Phragmites berlandieri
Anchoa mitchilli3 Hypanus americanus3 Physalis angustifolia
Anchoa sp.3 Hypanus sabinus3 Physostegia leptophylla
Anchoa spp.3 Hypanus say3 Pilumnus sayi3
Ancylopsetta quadrocellata3 Hypleurochilus caudovittatus3 Pinnixa spp.3
Anguilla rostrata3 Hypleurochilus geminatus3 Platybelone argalus3
Anguilliformes spp.3 Hypleurochilus spp.3 Poaceae sp.
Aphredoderus sayanus3 Hyporhamphus meeki3 Pogonias cromis3
Archosargus probatocephalus3 Hyporhamphus spp.3 Polygonum hydropiperoides
Ariopsis felis3 Hypsoblennius hentz3 Polypremum procumbens
Aristida sp. Hypsoblennius ionthas3 Pomatomus saltatrix3
Astrapogon alutus3 Ictaluridae spp.3 Pomoxis nigromaculatus3
Astropecten articulatus Ictalurus furcatus3 Pontederia cordata
Astroscopus ygraecum3 Ictalurus punctatus3 Porichthys plectrodon3
Baccharis halimifolia Ictalurus spp.3 Portunidae spp.3
Bagre marinus3 Ilex vomitoria Portunus sayi3
Bairdiella chrysoura3 Ipomoea sagittata Potamogeton pusillus
Bare substrate Iris virginica Prionotus alatus3
Bathygobius soporator3 Iva frutescens Prionotus longispinosus3
Batis maritima2 Juncus acuminatus2 Prionotus rubio3
Belonidae spp.3 Juncus roemerianus2 Prionotus scitulus3
Belzebub faxoni3 Juncus scirpoides2 Prionotus spp.3
Bidens mitis Juncus spp.2 Prionotus tribulus3
Blenniidae spp.3 Juncus validus2 Processa hemphilli3
Blutaparon vermiculare2 Kosteletzkya pentacarpos Ptilimnium capillaceum
Bolboschoenus robustus Kyphosus sectatrix3 Pylodictis olivaris3
Borrichia frutescens Lactophrys trigonus3 Quercus marilandica
Bothidae spp.3 Lactophrys triqueter3 Quercus minima
Brachyura3 Lagocephalus laevigatus3 Quercus muehlenbergii
Brevoortia spp.3 Lagodon rhomboides3 Rachycentron canadum3
Brotula barbata3 Larimus fasciatus3 Raja eglanteria3
Brown algae1 Latreutes parvulus3 Remora remora3
Busycon spp. Leander tenuicornis3 Rhinoptera bonasus3
Calamus arctifrons3 Legume sp. Rhithropanopeus harrisii3
Calamus leucosteus3 Leiostomus xanthurus3 Rhizophora mangle2
Calamus spp.3 Lepisosteus oculatus3 Rhizoprionodon terraenovae3
Calappa ocellata3 Lepisosteus osseus3 Rimapenaeus constrictus3
Callinectes sapidus3 Lepomis auritus3 Rimapenaeus similis3
Callinectes similis3 Lepomis gulosus3 Rimapenaeus spp.3
Callinectes spp.3 Lepomis macrochirus3 Rumex verticillatus
Campsis radicans Lepomis microlophus3 Ruppia maritima1
Carangidae spp.3 Lepomis punctatus3 Rypticus maculatus3
Caranx crysos3 Lepomis spp.3 Sabal palmetto
Caranx hippos3 Leptochela serratorbita3 Sagittaria graminea
Caranx latus3 Libinia dubia3 Salicornia ambigua2
Caranx ruber3 Libinia emarginata3 Salvinia spp.
Caranx spp.3 Limonium carolinianum2 Sardinella aurita3
Carcharhinus limbatus3 Limulus polyphemus Saururus cernuus
Carex hyalinolepis Lithadia granulosa3 Scartella cristata3
Carex joorii Lobotes surinamensis3 Schoenoplectus americanus
Carex sp. Lolliguncula brevis3 Schoenoplectus californicus
Carpiodes carpio3 Lucania parva3 Sciaenidae spp.3
Carpiodes cyprinus3 Ludwigia repens Sciaenops ocellatus3
Centella asiatica Luidia alternata Scomberomorus maculatus3
Centrarchidae spp.3 Luidia clathrata Scorpaena brasiliensis3
Centrarchus macropterus3 Lutjanus analis3 Scorpaena sp.3
Centropristis ocyurus3 Lutjanus campechanus3 Selene setapinnis3
Centropristis philadelphica3 Lutjanus griseus3 Selene vomer3
Centropristis striata3 Lutjanus sp.3 Serraniculus pumilio3
Cephalanthus occidentalis Lutjanus spp.3 Serranidae spp.3
Ceratophyllum demersum Lutjanus synagris3 Serranus subligarius3
Chaetodipterus faber3 Lycopus virginicus Sesbania punicea
Chara spp.1 Lysmata wurdemanni3 Sesbania vesicaria
Chasmodes saburrae3 Lythrum lineare Sesuvium portulacastrum2
Chilomycterus schoepfii3 Macrobrachium ohione3 Setaria parviflora
Chloroscombrus chrysurus3 Megalops atlanticus3 Sicyonia brevirostris3
Cicuta maculata Melongena corona Sicyonia dorsalis3
Citharichthys macrops3 Membras martinica3 Sicyonia laevigata3
Citharichthys sp.3 Menidia beryllina3 Sicyonia typica3
Citharichthys spilopterus3 Menidia sp.3 Smilax auriculata
Citharichthys spp.3 Menidia spp.3 Smilax bona-nox
Cladium mariscus Menippe mercenaria3 Smilax walteri
Clibanarius vittatus3 Menticirrhus americanus3 Solidago sempervirens
Crinum americanum Menticirrhus littoralis3 Sparidae spp.3
Ctenogobius boleosoma3 Menticirrhus saxatilis3 Spartina alterniflora2
Ctenogobius shufeldti3 Menticirrhus spp.3 Spartina cynosuroides2
Ctenogobius spp.3 Metoporhaphis calcarata3 Spartina patens2
Ctenogobius stigmaticus3 Microgobius carri3 Sphoeroides nephelus3
Ctenopharyngodon idella3 Microgobius gulosus3 Sphoeroides parvus3
Cuapetes americanus3 Microgobius microlepis3 Sphoeroides spengleri3
Cynoscion arenarius3 Microgobius sp.3 Sphoeroides spp.3
Cynoscion nebulosus3 Microgobius spp.3 Sphyraena barracuda3
Cynoscion nothus3 Microgobius thalassinus3 Sphyraena borealis3
Cynoscion spp.3 Microphis brachyurus3 Sphyraena guachancho3
Cyperaceae sp. Micropogonias undulatus3 Sphyraena spp.3
Cyperus haspan Micropterus salmoides3 Sphyrna tiburo3
Cyperus sp. Mikania scandens Sporobolus virginicus2
Cyprinella venusta3 Minytrema melanops3 Squilla empusa
Cyprinidae spp.3 Monacanthus ciliatus3 Stellifer lanceolatus3
Cyprinodon variegatus3 Moreiradromia antillensis3 Stenotomus caprinus3
Cyprinus carpio3 Morone chrysops x saxatilis3 Stephanolepis hispida3
Dasyatis sp.3 Morone hybrid3 Strongylura marina3
Diapterus auratus3 Morone saxatilis3 Strongylura notata3
Dichanthelium sp. Morone spp.3 Strongylura spp.3
Diplectrum bivittatum3 Moxostoma spp.3 Strongylura timucu3
Diplectrum formosum3 Mugil cephalus3 Suaeda linearis2
Diplectrum spp.3 Mugil curema3 Syacium papillosum3
Diplodus holbrookii3 Mugil spp.3 Symphurus parvus3
Distichlis spicata2 Muhlenbergia capillaris Symphurus plagiusa3
Dormitator maculatus3 Mycteroperca microlepis3 Symphyotrichum tenuifolium
Dorosoma cepedianum3 Mycteroperca phenax3 Syngnathidae spp.3
Dorosoma petenense3 Mycteroperca spp.3 Syngnathus floridae3
Dorosoma spp.3 Myrica cerifera Syngnathus louisianae3
Drift algae1 Myrophis punctatus3 Syngnathus scovelli3
Dyspanopeus texanus3 Najas guadalupensis Syngnathus spp.3
Echeneis naucrates3 Neopanope packardii3 Syngnathus springeri3
Echeneis neucratoides3 Neverita duplicata Synodus foetens3
Echeneis spp.3 Nicholsina usta3 Synodus spp.3
Echiophis punctifer3 No fish Syringodium filiforme1
Edrastima uniflora No grass in quadrat1 Taxodium distichum
Eleocharis fallax Notemigonus crysoleucas3 Thor spp.3
Eleotris amblyopsis3 Notropis maculatus3 Toxicodendron radicans
Elopidae3 Notropis spp.3 Tozeuma carolinense3
Elopidae spp.3 Oenothera simulans Trachinotus carolinus3
Elops saurus3 Ogcocephalus corniger3 Trachinotus falcatus3
Elops smithi3 Ogcocephalus cubifrons3 Trichiurus lepturus3
Elops spp.3 Ogcocephalus pantostictus3 Trinectes maculatus3
Engraulidae spp.3 Ogcocephalus radiatus3 Tylosurus crocodilus3
Enneacanthus gloriosus3 Ogyrides alphaerostris3 Tylosurus spp.3
Epinephelus morio3 Ogyrides hayi3 Typha latifolia
Epinephelus spp.3 Ogyrides sp.3 Typha sp.
Erotelis smaragdus3 Oligoplites saurus3 Typhaceae
Etheostoma fusiforme3 Ophichthidae3 Unidentified fish3
Etheostoma spp.3 Ophichthus gomesii3 Unidentified shrimp3
Etheostoma swaini3 Ophidion holbrookii3 Urocaris longicaudata3
Etropus crossotus3 Ophidion josephi3 Urophycis floridana3
Etropus cyclosquamus3 Ophioderma spp. Urophycis regia3
Etropus microstomus3 Ophiothrix (Ophiothrix) angulata Vallisneria americana
Etropus rimosus3 Opisthonema oglinum3 Vigna luteola
Etropus spp.3 Opsanus beta3 Vitta usnea
Eucinostomus argenteus3 Opsopoeodus emiliae3 Vokesinotus perrugatus
Eucinostomus gula3 Orthopristis chrysoptera3 Woody debris
Eucinostomus harengulus3 Osmundastrum cinnamomeum Xanthidae sp.3
Eucinostomus spp.3 Ovalipes floridanus3 Xanthidae spp.3
Eurypanopeus depressus3 Ovalipes ocellatus3 Xiphopenaeus kroyeri3
Eustachys petraea Ovalipes spp.3 Zannichellia palustris
Filamentous algae1 Pagurus annulipes3 Acanthostracion lactrophyrs3

1 - Submerged Aquatic Vegetation, 2 - Coastal Wetlands, 3 - Nekton

References

1.
Florida Department of Environmental Protection (DEP); Office of Resilience and Coastal Protection (RCP); Apalachicola National Estuarine Research Reserve. Apalachicola National Estuarine Research Reserve System-Wide Monitoring Program. (2024).
2.
Florida Department of Environmental Protection (DEP). Florida STORET / WIN. (2024).
3.
U.S. Environmental Protection Agency (EPA). EPA STOrage and RETrieval Data Warehouse (STORET)/WQX. (2023).
4.
U.S. Environmental Protection Agency (EPA); Office of Research and Development. Environmental Monitoring Assessment Program. (2004).
5.
U.S. Environmental Protection Agency (EPA); Office of Water; National Oceanic and Atmospheric Administration (NOAA); U.S. Geological Survey (USGS); U.S. Fish and Wildlife Service (USFWS); National Estuary Program (NEP); coastal states. National Aquatic Resource Surveys, National Coastal Condition Assessment. (2021).
6.
University of Florida (UF); Institute of Food and Agricultural Sciences. Florida LAKEWATCH Program. (2024).
7.
Florida Fish and Wildlife Conservation Commission (FWC). Fisheries-Independent Monitoring (FIM) Program. (2022).
8.
Florida Fish and Wildlife Conservation Commission (FWC); Florida Fish and Wildlife Research Institute (FWRI). Harmful Algal Bloom Marine Observation Network. (2018).
9.
National Oceanic and Atmospheric Administration (NOAA); National Centers for Coastal Ocean Science’s Center for Coastal Monitoring and Assessment. National Status and Trends Bioeffects program. (1994).
10.
Florida Department of Environmental Protection (DEP); Office of Resilience and Coastal Protection (RCP); Apalachicola National Estuarine Research Reserve. Apalachicola National Estuarine Research Reserve Juvenile Fish and Benthic Macroinvertebrate Monitoring. (2023).
11.
Florida Department of Environmental Protection (DEP); Office of Resilience and Coastal Protection (RCP); Central Panhandle Aquatic Preserves. Central Panhandle Aquatic Preserves Seagrass Monitoring. (2023).
12.
Alabama Center for Ecological Resilience (ACER). Oyster shell heights and taxonomic diversity in 2015-2017 among previously documented oiled and non-oiled reefs in Louisiana, Alabama, and the Florida panhandle. (2017).
13.
Florida Department of Environmental Protection (DEP); Office of Resilience and Coastal Protection (RCP); Central Panhandle Aquatic Preserves; Florida Fish and Wildlife Conservation Commission (FWC). Franklin County Coastal Waters Seagrass Monitoring. (2017).
14.
Oyster Sentinel. Oyster Sentinel . (2016).
15.
Florida Department of Environmental Protection (DEP); Office of Resilience and Coastal Protection (RCP); Central Panhandle Aquatic Preserves. NRDA Oyster Cultch Recovery Project. (2024).
16.
National Oceanic and Atmospheric Administration (NOAA); National Data Buoy Center. National Data Buoy Center. (2024).
17.
Florida Department of Environmental Protection (DEP); Office of Resilience and Coastal Protection (RCP); Apalachicola National Estuarine Research Reserve. Apalachicola Bay Ephemeral SAV Monitoring. (2004).